Monday, March 26, 2018

Data and Tools

All these resources below are publicly available for researchers around the world. Feel free to contact us for questions/issues/comments.

Decipher the Function and Evolution of Gene Regulatory System

  • Cell BLAST: a scRNA-Seq querying algorithm.
  • LocExpress: estimating expression of novel transcripts across multiple tissues and cell types in real time.
  • CPC2 (Mirror): Coding Potential Calculator, version 2, the CPC1 (Mirror) is also available.
  • AnnoLnc: on-the-fly analysis for novel human long noncoding RNAs(lncRNAs).
  • RefLnc: A comprehensive annotation for human long noncoding RNAs(lncRNAs).
  • SCBrowse: Database for lncRNAs in Human Embryonic Stem Cells (hESCs).
  • PlantTFDB (Mirror): Plant Transcription Factor Database, a portal for the functional and evolutionary study of plant transcription factors.
  • PlantRegMap (Mirror): a portal for the regulation data and analysis tools in plants.

Interpret Genetic Variants Accurately

Meanwhile, we also make several powerful computing and data integrating infrastructures we developed freely available to the community, as both open source toolkit and public webserver.

  • WebLab: a multifunctional bioinformatics analysis platform integrating diversified tools with unified, user-friendly web interface.
  • ABrowse: a customizable next-generation genome browser framework.
  • ABCGrid: a Java-based lightweight Application of Bioinformatics Computing Grid