All these resources below are publicly available for researchers around the world. Feel free to contact us for questions/issues/comments.
- Cell BLAST: a large-scale integration & searching algorithm for massive heterogeneous scRNA-seq data.
- GLUE/CLUE for multi-omics integration and regulatory inference.
- SLAT for aligning heterogeneous spatial slices across various conditions, platforms as well as modalities.
- LocExpress: estimating expression of novel transcripts across multiple tissues and cell types in real time.
- CPC2: Coding Potential Calculator, version 2, the CPC1 is also available.
- RibpCalc: Modeling RNA Coding Ability quantitatively.
- AnnoLnc: on-the-fly analysis for novel human long noncoding RNAs(lncRNAs).
- RefLnc: a comprehensive annotation for human long noncoding RNAs(lncRNAs).
- LOST & FOUND for calling loss events for protein-coding genes.
- COPE ：the first context-sensitive variant annotation tool for coding variants and regulatory variants at TFBS.
- CARMEN: a novel algorithm to identify functional noncoding expression-modulating variants.
- REVA: a database for noncoding expression-modulating variant.
- CCGD/ESCC: Chinese Cancer Genomic Database-Esophageal Squamous-Cell Carcinoma, a joint work with Wu Lab at State Key Laboratory of Molecular Oncology, Chinese Academy of Medical Science
- PlantTFDB : Plant Transcription Factor Database, a portal for the functional and evolutionary study of plant transcription factors.
- PlantRegMap : a portal for the regulation data and analysis tools in plants.
- ATRM: a database for Arabidopsis transcriptional regulatory map.
Meanwhile, we also make several powerful computing and data integrating infrastructures we developed freely available to the community, as both open source toolkit and public Webserver.
- GSDS: a gene feature visualization server.
- WebLab: a multifunctional bioinformatics analysis platform integrating diversified tools with unified, user-friendly web interface.
- ABrowse: a customizable next-generation genome browser framework.
- ABCGrid: a Java-based lightweight Application of Bioinformatics Computing Grid